News
Date | Description |
---|---|
2023-06-24 |
Congrats Tirthankar for publishing a paper in Nature Communications describing the impact of drug interventions during sepsis. |
2023-06-12 |
Congrats Aaron for publishing a paper in Communications Biology describing a method to increase accuracy when analyzing mass spectrometry data. |
2023-04-20 |
Congrats Cesar for publishing a paper in cell reports describing how Shigella can manipulate the cell cytoskeleton |
2023-02-03 |
Congrats Tommaso for publishing a paper in communications biology describing the evolution of ipsilateral breast cancer in humans |
2023-01-21 |
Congrats Carlos for publishing a paper in PLoS Computational Biology describing a method to sequence proteins using mass spectrometry |
2022-12-13 |
Congrats Wael for publishing a paper in EMBO Molecular Medicine |
2021-11-15 |
Congrats Hamed for publishing a paper in JoVE describing how to create and extend TX-MS Jupyter reports using txms.org |
2021-09-30 |
Congrats Sounak for publishing a paper in mSystems describing genetic and environmental factors influencing host-pathogen protein interactions. |
2021-06-17 |
Congrats Hamed for publishing a paper in Bioinformatics describing Cheetah-MS, a web-server using a fast TX-MS implementation to model protein complexes using mass spectrometry data. |
2021-04-16 |
Congrats Tommaso for publishing a paper in JPR describing a Proteogenomic workflow linking a molecular phenotype to spiculated tumors. |
2021-04-09 |
Congrats Anahita for publishing a paper in ELife describing the use of mass spectrometry to detect host-response patterns during infections. |
2021-04-07 |
Congrats Mahmudul for publishing a paper in Chemical Science describing the use of X-ray crystallography and TX-MS to determine the structure DS-Epimerase 1. |
2021-02-02 |
Congrats Hamed for publishing a paper in Frontiers in Genetics describing the use of TX-MS to study interactions between bacterial surface proteins and the human MAC. |
2021-01-10 |
Congrats Hamed for publishing a paper in PLoS Computational Biology describing the use of TX-MS to study interactions between bacterial surface proteins and human antibodies |
2020-06-25 |
Developing scientific software can be challenging - this paper by Julia and the RosettaCommons details essential lessons we have learned while developing Rosetta |
2020-06-13 |
Congrats Thomas and co-authors for publishing a paper in Frontiers in Cellular and Infection Microbiology on the role of microRNAs in parasitism |
2020-06-08 |
Check out this paper if you are interested in macromolecular modeling using rosetta: http://lars.malmstroem.net/publications/p32483333/ |
2019-01-14 |
Congrats Simon and Hamed for publishing a technology we call TX-MS in Nature Communications. TX-MS integrates structure modeling with Crosslinking Mass Spectrometry, thereby allowing us to study quaternary protein structures directly in complex samples. |
2017-11-03 |
Congrats Ömer and co-authors for publishing a paper in Nature Methods on how to track cells in movies |
2017-07-02 |
Congrats George for publishing a paper in Nature Biotechnology, detecting so-called PTMs in large sample cohorts |
2017-02-23 |
Congrats Kristoffer for publishing a paper in MCP, building a model of host-pathogen protein-protein interactions |
2016-09-01 |
Congrats Hannes for publishing a paper in Nature Methods describing OpenMS 2.0, an open-source MS analysis software |
2016-08-03 |
Congrats Hannes for publishing a paper in Nature Methods describing TRIC, a method to improve MS reproducibility |
2016-06-10 |
Postdoc in Bioinformatics |
2016-01-29 |
Congrats Emil for publishing a paper in Chemical Science describing the enzymatic action of the enzyme DS-EPI1 |
2016-01-25 |
Congrats Erik for publishing a paper in Nature Communications on plasma proteomes during bacterial infections |
2015-11-09 |
Congrats Hannes for publishing a paper discussing the importance of almost complete protein expression matrices |
2015-10-28 |
Congrats Thomas for publishing a paper describing the software tool xTract in Nature Methods |
2015-09-25 |
I am pleased that our latest paper is now available online. I'd like to extend a big thanks to all collaborators! |
2015-06-11 |
Congrats Hannes for being awarded the SIB Best Swiss Bioinformatics Graduate Paper 2015 for the openSWATH paper |
2015-05-07 |
Congrats Martin for publishing a paper on cancer biomarkers and mass spectrometry in JPR |
2015-05-02 |
Congrats Hannes for publishing a paper describing how to process large mass spectrometry data files |
2015-04-21 |
We have an open PhD position in computational structural biology. Please help us spread the word!! |
2015-03-21 |
Congrats Hannes for publishing a paper on visualizing proteomics data |
2015-03-04 |
We are looking for new co-workers. Please forward this ad to anybody you think might be interested! |
2015-03-04 |
Bioinformatics Analyst - Genomics |
2014-11-21 |
We are looking for a system administrator to help us build a cloud for scientific computing. Jobangebote für Systemadministrator in Schweiz (2 neu) Top-Jobs des Tages im Bereich Systemadministrator: 259 Stellen in Schweiz. Nutzen Sie Ihr berufliches Netzwerk und finden Sie einen Job. Jeden Tag werden neue Jobs in Systemadministrator hinzugefügt. ch.linkedin.com |
2014-11-19 |
Congrats Andreas for publishing a paper on optimizing mass spec search engines using synthetic peptides |
2014-11-07 |
Congrats Johan for publishing DIANA in Bioinformatics |
2014-09-04 |
We are looking for new co-workers. Please forward this ad to anybody you think might be interested! |
2014-05-22 |
Congrats Peter for publishing a paper describing our efforts developing iportal, a workflow manager |
2014-05-22 |
Congrats Magdalena for the new paper in JBC describing a novel virulence factor from a human pathogen |
2014-05-22 |
We are looking for a scientific data application specialist. Please spread the word if you know somebody! Thanks! |
2014-04-23 |
Congrats George for publishing a paper in Bioinformatics describing the software package aLFQ |
2014-04-19 |
Congrats Hannes and George for publishing a paper in Nature Biotechnology describing OpenSWATH |
2014-04-19 |
Congrats Johan for publishing a paper in MCP describing NumPress |
2014-01-15 |
Congrats Hannes and Uwe for publishing a paper describing pyOpenMS |
2013-09-27 |
Congrats Abdullah and Franz for publishing a paper on how to dock proteins using XL-MS data |
2013-06-15 |
Published my first independent recommendation after F1000 promoted me to Faculty member |
2013-02-11 |
Congrats Hendrik for publishing a paper on how to calculate protein abundance from shotgun data |
2012-12-21 |
Congrats Christofer for publishing a paper on targeted mass spectrometry assays for all proteins from a pathogen |
2012-10-24 |
Please consider signing http://no-cuts-on-research.eu if you think Europe should prioritize research funding. Thanks! |
2012-09-19 |
Congrats Franz, Abdullah and Daniel for publishing a paper on how to use MS and modeling to probe protein complexes |
2012-08-08 |
Congrats Daniel for publishing Bioinformatic challenges in targeted proteomics |
2012-05-21 |
Congrats Hannes for publishing this paper |
2012-05-10 |
Chimp Shows Planning Abilities |
2012-05-10 |
Your Inner Bugs Are What You Eat - ScienceNOW |
2011-11-29 |
We welcome Lorenz Blum to the lab. Lorenz will work in the SCIBUS portal project building web portals for scientific computing |
2011-11-29 |
This paper describes how a human pathogen re-organizes its proteome in response to increasing amount of human plasma |
2011-10-20 |
Posted a F1000 evaluation on a paper measuring growth rate phenotypes in > 1M conditions |
2011-08-17 |
We're hiring! We are currently looking for a bioinformatician / software developer |
2011-08-11 |
Congrats Kevin for publishing results from the Human Proteome Folding project |
2011-08-04 |
Going to the RosettaCon2011 conference in Leavenworth outside Seattle. |
2011-07-16 |
Trial and error talk on TED |
2011-07-08 |
Finally, a press release in English about the computational experiment carried out on the IBM cloud |
2011-07-06 |
I'm going to the openMS User meeting in Berlin in September - hope to see many of you there! |
2011-06-15 |
Congrats Abdullah for publishing the Xwalk algorithm |
2011-06-10 |
Article (in German) about our efforts to carry out high-performance computing tasks in the IBM cloud |
2011-06-10 |
youtube video about high-performance computing in the IBM cloud. |
2011-05-13 |
Finished a big computational experiment using the IBM cloud |
2011-04-20 |
Hannes was awarded the ETH Medaille and the Willi-Studer Prize for his Master Thesis |
2011-02-26 |
Just back from a conference in Leukerbad that offered some great talks and some decent skiing. |
2010-12-19 |
Congrats Johan for the 'future scientific leader' award from the Swedish Foundation for Strategic Research (Swedish) |
2010-12-04 |
Bacteria use arsenic instead of phosphorus which might have profound implications for biology |
2010-11-14 |
EU and USA research dominance coming to an end? |
2010-11-10 |
We are looking for a talented bioinformatician / software developer |
2010-11-02 |
Attending the systemsx conference in Geneva. |
2010-10-26 |
Posted a new evaluation for F1000 |
2010-10-20 |
Wild ideas on the role of bacteria in human health and disease |
2010-10-11 |
Contributed a chapter to the Springer Protocols Methods in Molecular Biology series: http://www.ncbi.nlm.nih.gov/pubmed/20835793 |
2010-09-22 |
Story on how GPS was born - http://on.ted.com/8aKZ!. Also some thoughts on how good ideas come about. |
2010-09-17 |
ETH is ranked at the 15th best institution in the world: http://t.co/Q2M0fcj |
2010-09-17 |
TED organizer Chris Anderson compares the importance of youtube to the importance of Gutenberg's book press: http://on.ted.com/8Zfw |
2010-08-24 |
Successor to social networks? Games maybe: http://on.ted.com/8WDL. Building a 'game layer' on top of the world. |
2010-07-12 |
TV killing creativity? http://www.newsweek.com/2010/07/10/the-creativity-crisis.html |
2010-05-27 |
I love Ken's TED talks, he's an awesome speaker. His message is important but seems difficult to achieve: http://on.ted.com/8LtJ |
2010-05-26 |
Congrats to George for successfully finishing his Undergrad research project! |
2010-05-19 |
Congratulations to Hannes for successfully finishing his Masters! |
2010-05-03 |
Daniel Pink on motivation - money is not everything: http://www.pbs.org/newshour/bb/business/jan-june10/makingsense_04-15.html |
2010-04-27 |
Posted an F1000 evaluation of a study investigating the spread of antibiotic-resistant bugs |
2010-04-23 |
Why business people shouldn't build bridges: http://on.ted.com/8HJ4 |
2010-04-18 |
I'm excited people are citing my papers: my h-index (http://en.wikipedia.org/wiki/H-index) just reached 11! Thanks! |
2010-04-12 |
Thomas Denecke joined the lab to work on a distributed computing project: http://lars.malmstroem.net/science/the-lab.html |
2010-04-12 |
Pedro Navarro started today. He is a post-doc and will be working on quantitative proteomics related problems. |
2010-04-07 |
Hannes Roest will join my lab as a Ph.D. student this summer. |
2010-02-22 |
Very true indeed! http://on.ted.com/89mF |
2010-02-12 |
Leila Pirhaji will join my lab as a Ph.D. student as soon as all visa issues are cleared! |
2010-02-03 |
Going to the Paul Scherrer Institute (www.psi.ch) to see if I can get access to their synchrotron. |
2010-01-20 |
In Sweden to see my family |
2010-01-18 |
Going to Geneva to present some research at the Swiss Institute of Bioinformatics |
2010-01-13 |
posted an f1000 evaluation |
2010-01-08 |
ETH is ranked 4th in Europe: http://www.arwu.org/ARWU2009.jsp |
2010-01-03 |
Signing up on twitter |
2010-01-03 |
Finished improving http://lars.malmstroem.net. Let me know what you think! |
2009-12-02 |
Twitter: I now have a twitter account, see above. |
2009-11-06 |
Associated faculty member of f1000 I'm now an associated faculty member of the F1000 |
2009-07-20 |
Organizing JoiningForces The joining forces symposium is scheduled for November 20th, 2009 |
2009-07-01 |
Software engineer hired Lucia Espona was hired to work on the Swiss grid portal |
2009-06-03 |
Diatom biochemical pathways paper published. Deciphering diatom biochemical pathways via whole-cell proteomics was published in Aquat Microb Ecol. |
2009-04-20 |
NEW POSITION! We're looking for a skilled computer programmer with experience from parallel computing and web portals for a 12 month project employment. |
2009-02-01 |
Informatics specialist hired. Andreas Quandt was hired as informatics specialist and is responsible for the computational pipelines |
2008-12-15 |
DXMS/de novo structure prediction paper accepted** On the use of hydrogen/deuterium exchange mass spectrometry data to improve de novo protein structure prediction was accepted for publication in RCM |
2008-11-08 |
DS-epimerase characterization paper accepted Identification of the active site of DS-epimerase 1 and requirement of N-glycosylation for enzyme function was accepted for publication in JBC |
2008-09-15 |
Secreted glycoproteins paper accepted Identification of secreted glycoproteins of human prostate and bladder stromal cells by comparative quantitative proteomics. was accepted for publication in Prostate |
2008-09-01 |
New Job! New Country! I have a new job as a senior researcher (Oberassistent) in Ruedi Aebersolds group at the ETH in Zurich, Switzerland, where I hope to build a research group in protein structure and mass spectrometry related bioinformatics. |
2008-06-04 |
Poster presentation at ASMS Lars presented a poster, Spectral Clustering and LC-MS Alignment Increase Annotation Rate of Tandem Mass Spectra from Shotgun Proteomics Data at the 56th ASMS in Denver |
2007-12-05 |
Phytoplankton proteome analysis manuscript submitted A manuscript describing the proteome analysis of phytoplankton authored by Brook Nunn, Jocelyn Aker, Robert Strzepek, Theodore Freeman, Lars Malmstrom, Scott Shaffer and David Goodlett was submitted. |
2007-09-25 |
The Baker groups CASP7 results published in Proteins Structure prediction for CASP7 targets using extensive all-atom refinement with Rosetta@home. was published in Proteins |
2007-08-03 |
Oral presentation at RosettaCon. Lars will present his work on integrating MS derived data to improve de novo protein structure prediction. |
2007-06-06 |
Oral presentation at ASMS. Lars presented DXMS combined with de novo protein structure prediction facilitates model selection at the ASMS conference in Indianapolis. |
2007-06-04 |
Co-author on an oral presentation at ASMS. David Goodlett, Ph.D. presented Cross-linked Peptide Data Obtained by Ion Mobility used to Sort Correct/Incorrect in silico Protein Conformation Predictions at the ASMS conference in Indianapolis. |
2007-03-20 |
Structure prediction for yeast published in PLoS Biology. Protein tertiary structures for the yeast S.cerevisiae genome was generated using the de novo protein structure method Rosetta. The article was published in PLoS Biology. |